Disclaimer
Flatpak uses OSTree, like Fedora Atomic Desktops (Silverblue, Kinoite etc) and similar to BTRFS snapshots.
So many files are deduplicated and linked, not actually there
https://gitlab.com/TheEvilSkeleton/flatpak-dedup-checker
50GB without
31GB with deduplication
21,4GB with BTRFS compression
Thanks! The same goes for ostree system versions and BTRFS snapshots probably.
I have a similar problem with virt-manager and I think that doesnt create dynamically allocated qcow2 containers?